Source code for pytaxize.children.children

import warnings
import sys
from pytaxize.itis import hierarchy_down


[docs]class Children(object): """ Children: Retrieve taxonomic children Usage:: from pytaxize import Children # ITIS ## one id x = Children(179913) x x.ids x.itis() ## many ids - with one invalid id x = Children([179913, 174321, 9999999]) x x.ids res = x.itis() res[179913] res[174321] res[9999999] """ def __init__(self, ids): if isinstance(ids, int): ids = [ids] self.ids = ids def __repr__(self): x = """<%s>\n""" % type(self).__name__ y = """ ids: %s""" % ",".join([str(w) for w in self.ids[:10]]) return x + y def itis(self): out = [] for i in range(len(self.ids)): id = self.ids[i] res = hierarchy_down(id) if res[0] is None: warnings.warn("No results for taxon '" + str(id) + "'") res = {} out.append(res) out = dict(zip(self.ids, out)) return out